Writing on oceans, brains, and the biographical

On the Permanence of Beauty

Posted on May 9, 2013

My mother, Diane Lamb-Wanucha, died in October of 2011. She passed on after a relatively short but subjectively interminable succumbing to–I have no qualms saying–the most devastating disease that affects the human species. Frontotemporal lobe dementia is a form of neurodegeneration that kills cells in the most recently evolved areas of the human brain. Eventually, the damage becomes an existential nightmare; bizarre behavior, lack of self-control and insight, inability to tailor one’s emotions to social contexts, yes, all those good things that make us people.

Mom and GregYet, she has been able to defy death. There is no better way to slip through a small loophole in the poorly drafted legislation of fatal brain disease than to have produced a lifetime’s worth of art. And my mother was an artist. She had been ever since she walked the halls of Massachusetts College of Art in the 1970s, so stunning she was likened to Greta Garbo, the Swedish actress who is listed as “the most beautiful woman that ever lived” in the 1954 edition of the Guinness Book of World Records. I’ve been told that a photography student followed her around with a camera.

She was a ceramicist, a sculptor whose medium is clay. In the cellar, she would pound and knead the thick mud and shape it on a spinning potter’s wheel. She carved the clay with razors and old toothbrushes, baked the form in a 400-degree kiln, painted it, then baked it again. I’ve recently inherited many of her quite functional works of art. I eat off of sturdy, thick brown plates and bowls and use her cerulean blue teapot. I wear the heavy ceramic painted beads on necklaces. I’ve placed her statues of horses and Egyptian gods around my apartment. She surrounds me.

Going through attic rubble, I recently found one of her notebooks from a Mass Art anatomy drawing class. Out of the pages fell a large, blank postcard of a Luna moth perched on a fern. I have always loved the sea-foam green ‘Saturniidae’ moth with passion, yet I’ve never been able to articulate why, besides its beauty, I so admire a mouth-less animal who lives for just 7 days with the sole aim of mating. But the moment I saw this aged print, the reason for my love came rushing back.

The postcard.

I was eight or nine years old when my mother mysteriously announced to my 4-year-old sister Francesca and I that we would be heading down the street to visit our family friends, the El-Far’s. When we arrived, our clones, my then-and-now best friend Jennie, her little sister Annie, and their mother Nancy were waiting for us in the backyard. In the middle of the lush green lawn waited the large grimy fish tank that had been sitting inexplicably on the top of our fridge for the past two weeks. The tank contained only a stick with what looked like a brown ball of fuzzy hay protruding from the bark.

But something was happening. We, four little brown-haired girls and our mothers, crouched around the tank peering at the entity now quivering from some force within it. It was a cocoon, I realized in fear and delight, made of old leaves and homespun silk. The noisy hatching process took minutes, and we squealed and tipped the tank over to let the alien stumble into the grass. The wings of a newly born Luna moth look small, we learned, but the papery extensions fill with blood in two hours. My mother had planned this; found a new cocoon and plotted the live performance of a shocking natural transformation from slovenly caterpillar to the most attractive moth in North America. And because of many of these experiences, I grew up very curious. So curious I ended up a science writer.

When her mind began to slip away seventeen years later, my need to understand, a need founded in a darkly motivated curiosity about my own biology, took over: interviews with specialists, weeks of Google Scholaring, sessions with the genetic counselor at Massachusetts General Hospital. I was in the right place at the right time. The week my mother had died in 2011, two independent US research groups reported their discovery of the genetic mutation causing her form of FTD. Her doctors immediately made this connection after her brain autopsy.

One of the genes on human chromosome 9, C9orf72, normally contains 30 repeats of the DNA letters GGGGCC, but in some people, the sequence repeats hundreds to thousands of times over. Quite an impressive typo. The multiplied nucleotides ruin the gene’s ability to make a certain important protein. This missing brain ingredient only becomes detrimental as the human brain’s aging process sets in sometime after age 30, when new metabolic processes must kick in to sustain nervous system function past reproductive years, according to the most current scientific insights. As a consequence, FTD usually strikes on the younger side of 50. Some brains can withstand the damage longer than others.

Soon after, researchers at UCSF Memory and Aging Center and the Mayo Clinic found that this specific C9orf72 mutation can cause both FTD and Lou Gehrig’s disease or amyotrophic lateral sclerosis (ALS). It’s a major cause of FTD and ALS in families showing a pattern of either or both diseases and some sporadic cases. The expansion is also found in some cases of Alzheimer’s. The scientific community was surprised. I wasn’t surprised at all. There have been cases of ALS in my mother’s relatives. Many FTD patients develop and die of ALS symptoms such as troubled swallowing and breathing.

In the end, my search turned up a quite interesting story of an ongoing paradigm shift in which FTD is at the center. Discoveries such as the C9orf72 mutation are adding momentum to the idea that biological overlaps exist between all neurodegenerative diseases. For example, the different syndromes of Alzheimer’s, ALS, corticobasal syndrome, and FTD can actually share identical genetic mutations and protein malfunctions. “The boxes we put these diseases into are collapsing,” said behavioral neurologist Carmela Tartaglia at UCSF Memory and Aging Center, who has, since her medical residency, opened up the brains of diagnosed Alzheimer’s patients to find FTD pathology instead.

The implications of these emerging ideas in behavioral neurology and treatment are no less than revolutionary. Imagine, one drug that targeted one pathological protein could help prevent or treat not one, but two or three different currently fatal diseases.

Interesting science aside, I also learned of the distinct possibility I inherited that rather ostentatious DNA glitch. I’ve learned there really aren’t any good answers for the questions that raises. Philosopher Soren Kierkegaard wrote that in angst over our own deaths, we are launched into the “dizziness of freedom.” Now acquainted with the abyss, we can choose how to live alongside it, free to become our selves against the background of finitude. We feel a new responsibility to make meaning of the world we’ve entered through angst. So, I suppose that’s what I’ll do. But let me say that it is a world with no welcome and no guide.

As Mother’s Day approaches, I’ve found myself staring at the Luna moth. I think about short-lived beauty. I think about one baby Luna moth on the first of its 7 fleeting days of glory crawling on the grass in Medfield, Massachusetts who unwittingly taught me, nearly 20 years later, that some beauty is permanent. Beauty isn’t just a physical example of facial symmetry or high cheekbones or huge green eyes or the tapering curve in a velvet wing. It can live as memory and emotion pronounced in the sculpted objects that surround me. And it’s the reason I can move on even as I lack what I need most.

‘Little Greens’ in the Age of Marine Genomics

Posted on May 5, 2013

Like seeing the world in a grain of sand, Penny Chisholm sees the inner workings of the biosphere in a tiny marine cyanobacteria. Now, a genomic revolution in biological oceanography is revealing how explosive encounters between microorganisms create ocean diversity.

As published in Oceans at MIT | Apr 25, 2013

In 2003, Prochlorococcus became one of the first marine microbes to have its entire set of genes sequenced. It’s an impressively small genome for the most abundant photosynthetic organism on the planet, for the source of the oxygen filling every fifth breath you take. This genus of cyanobacteria is a tiny master of ocean life, able to survive even at very low sunlight intensities and across a range of nutrient levels and temperatures. Biological oceanographer Penny Chisholm, whose team discovered ‘little greens’ in the Sargasso Sea in 1985, has devoted her entire career to understanding what regulates this microbe’s dominance in the ocean. That initial sequencing ushered Chisholm into the era of genomics, transforming her lab’s approach to their model microbe.

chisholmsciThe Chisholm lab soon sequenced other individual Prochlorococcus genomes from their own collection of cultured strains. The results were revelatory. While individual Prochlorococcus genomes share a core of about 1,200 genes, hundreds of other genes vary wildly from strain to strain. In fact, to this day, each sequencing of a strain uncovers about 200 brand new genes, some never before seen at all, most of unknown function. “We slowly learned there’s this incredible genetic diversity in oceans,” says Chisholm, “which is contributing to Prochlorococcus’ resilience and abundance.”

An Ocean’s Genome

At the same time as the Prochlorococcus genome sequencing, ocean genomics was taking its greatest stride forward as entrepreneur and biologist Craig Venter launched the Global Ocean Sampling Expedition, a large-scale cruise expedition to collect samples of microbes in seawater for genetic sequencing. Fortuitously for the Chisholm Lab, Venter’s cruise traveled the warm tropical waters that Prochlorococcus inhabits, making it likely that plenty of its unique genes would be cataloged into a rapidly growing ‘metagenomic’ database, essentially a library of genes from millions of different unspecified organisms.

MED4-Chr-ChrArmed with the fledgling set of metagenomic data, the Chisholm Lab started to use their individually sequenced genomes as references to locate Prochlorococcus genes in the “gemisch” of genes in the database. “Metagenomics is really what changed the way we do things,” says Chisholm. Suddenly, they were able to compare the gene pools of Prochlorococcus living in different ocean regions.

One of the lab’s first genomic era insights was that the contents of a Prochlorococcus genome depend on the environmental pressures in its habitat. For example, Prochlorococcus living in the Atlantic Ocean have many more genes for acquiring the essential nutrient phosphorous than do cells from the Pacific Ocean, which has a higher concentration of phosphorus. They concluded that Atlantic Ocean ecotypes have evolved a sensing and regulatory system that boosts the ability of microbes to find phosphorus in areas low in the nutrient. But this finding just scratched the surface of what genomics would reveal.

Close Encounters of the Viral Kind

A current focus of the lab is the mysterious interaction of viruses and Prochlorococcus in the ocean. Certain viruses contain Prochlorococcus metabolism genes, apparent vestiges of past gene-swapping encounters. Chisholm and her researchers were fascinated to find that a virus can use these genes to co-opt the host cell’s nutrient uptake machinery.

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These viruses shown here infect Prochlorococcus, and possible drive microbial evolution. Scale bars represent 100 nm. Courtesy M. Sullivan/MIT



In cell culture, the Chisholm lab has demonstrated that phosphate acquisition genes in the viral genome only turn on when their host cell is exposed to environments low in the nutrient. Evidently, the virus responds to phosphate limitation and uses its own gene to pull more phosphate into the cell. This viral exploitation both satisfies the host’s need for scarce nutrients and supplies the virus with enough phosphorus to replicate its DNA, explode its host, and release progeny virus back into the ocean to continue the cycle again. In other words, the host cell and its infecting viruses have co-evolved in response to the selection pressures in their environment.

Biologist Libusha Kelly, postdoctoral associate in the Chisholm lab, didn’t have much experience in microbial ecology before joining the lab, but she had plenty with genes. “Penny took a chance on a human geneticist,” she says, itself a sign of genomics’ growing importance to biological oceanography. Kelly is now looking deep into viral genomes to understand how much viruses are affecting host metabolism. Recently, she identified sequences from Prochlorococcus-infecting viruses from high and low phosphate regions of ocean. Using both sequenced genomes from cultured viruses and metagenomic data sets, she found that in low phosphate oceans, viruses are more likely to carry a particular phosphate acquisition gene. “This suggests,” Kelly says, “that the viruses are very attuned to the environmental pressure that the host is under, and they are trying to find ways to overcome that pressure so they can successfully infect the host.” Helping the host is the same as helping themselves.

The gene trading also happens the other way around. Chisholm lab researchers now constantly spot telltale signs that viruses have been fiddling in Prochlorococcus genomes, including spots on the genome called “hypervariable islands” where it seems viruses have inserted new genes. “We think that viruses are maintaining or creating diversity that natural selection then works on,” says Chisholm. “Even though they kill the host Prochlorococcus cells, all those cells have clones, so you can afford to lose some if in the process you have a diversity creating mechanism.” As her career at MIT passes its 37-year mark, recently crowned with a National Medal of Science, Chisholm has finally glimpsed the deepest roots of Prochlorococcus’ ecological diversity, her goal since the tiny microbe became her muse.

Emotion’s Alchemy

Posted on May 4, 2013

NEW INSIGHTS INTO THE SCIENCE OF EMOTION UNRAVEL THE SEEMING NEUROLOGICAL MAGIC THAT TURNS EMOTIONS INTO SOCIAL EXPRESSIONS.

As Published in Seed Magazine

You’re at breakfast enjoying a mouthful of milk when it happens: the zygomatic muscles, anchored at each cheekbone, tug the corners of your mouth backwards and up. Orbicular muscles encircling your eyeballs slowly squeeze tight beneath wrinkling skin. A 310-millisecond-long noise explodes from your throat, extending to a frequency of 10,000 Hertz. Five shorter pulses of the “h” sound follow, five times per second, hovering around 6 Hertz, each lasting a fifteenth of a second. Your heart reaches 115 beats per minute. Blood vessels relax. Muscle tone softens. Abdominal muscles clench. The soft tissue lining your upper larynx vibrates 120 times per second as air blasts past. The milk spews forth. You are laughing.

May Lesser



Laughter, real laugh-till-you-cry laughter, is one of many human emotional expressions. Arguably, laughing and its tearful counterpart, crying, are the loudest, most intrusive non-linguistic expressions of our species. But for all of that familiarity, they are little-understood behavioral mysteries parading in the light of everyday experience. Though evolutionary biologists have long explored the mammalian origins of emotional expression, human laughs and cries only rarely become subjects of cognitive neuroscience. But that may not stay the case. Laughing and crying, being live demonstrations of emotion and its social expression, provide new entryways into the tangled pathways of the brain.

For centuries, philosophers and physiologists have puzzled over the phenomenon of emotion. Where are joy, sadness, fear located in the “gelatinous substance” of the brain? wondered nineteenth century phrenologist Franz Gall. How is emotion’s expression related to subjective feeling? In the 1890s, psychologists William James and Carl Lange suggested we don’t cry because we are sad, rather, “we feel sorry because we cry, angry because we strike, afraid because we tremble,” but other theories reigned. And though the James-Lange theory has had a resurgence in recent decades, not until fMRI technology revealed images of the emotional brain could we begin to empirically explore Shakespeare’s musing in The Merchant of Venice: “Tell me where is fancy bred / Or in the heart, or in the head?”

A way of coming to a more integrated understanding of emotion is to surrender to the boundless accessibility of laughing and crying. I spent the last year occupied with such a task. The search for answers led me to areas as new to science as the mirror-neuron system, as painful as neurological disorders, and as artistic as method acting. There emerged a uniquely human science of emotion that begins to sew closed the doggedly dualistic notions of mind and body, heart and head.

A Ball of Emotion

“Try and keep your head still,” a soft voice murmured. “Just follow my fingers with your eyes.” The woman in the wheelchair couldn’t. At each attempted ascent, her eyes fell to center, unable to find visual anchor.

“How are you doing?”

“I’m fine,” she voiced over the course of eight seconds, her eyes calm and accepting. “I’m de-al-ing with i-t.” An array of wrinkles, right then, grew from her squinting eyelids. Rivulets of tears washed into the creases, bathing her cheeks in a Saran-wrap sheen. “Don’t mi-nd me,” she blurted.

Then, before anyone could reach out a hand in comfort, her jaw dropped and peals of laughter exploded into the boxy beige examination room at the Stanford University Neurology Clinic.

Dr. Josef Parvizi was unfazed. He sat on a short stool, his scarlet tie dangling as he leaned into her wheelchair, softly grasping her shoulder and stroking her hand. Parvizi, a neurologist at the Stanford School of Medicine, has a faint Iranian accent and an unwaveringly calm oval face. He’s seen patients like Nicole before.

Nicole’s crying started again, as though a memory had triggered a reaction that she would normally keep inside, like a filter between private thought and public expression was missing. Her sister, a rusty-haired woman clutching a leather bag, spoke for her. “So many things seem to upset her. There’s no rhyme or reason for an outburst,” she said. The doctor nodded. “It sounds like there are no brakes, like in a car. The brakes aren’t working so well for her emotion.”  Her sister sighed in agreement. Nicole stopped rocking the wheelchair and tried once again to answer the doctors’ questions.

For the past 12 years, Nicole, 51, has lived with a progressing case of multiple sclerosis, a disorder in which her immune system attacks its own central nervous system, slowly nibbling away at the ability of her brain to send signals and coordinate muscle movements and cognition. Her MS has taken away her ability to walk and has limited her speech. Her disease now jeopardizes her ability to control her expressions of happiness and sadness. Today, Parvizi believes he will diagnose Nicole with a disorder called pathological laughing and crying, or PLC.

PLC develops after a brain injury, stroke, seizure, or, as with Nicole, during a neurodegenerative disorder. Usually, a lesion or tumor has encroached upon brain structures that govern emotional suppression and expression. It seems like the episodes of laughing or crying deploy without reason. Actually, it’s the result of lowered emotional thresholds. A passing funny thought that a healthy person could normally suppress, triggers laughter in Nicole. She experiences a rift between what she expresses and what she actually feels. Her laughter is a vast overestimation of her true feelings.

Cerebellar Vigilance

Parvizi asked Nicole to hold up her arm for a few seconds. Her raised arm shivered back and forth like a broken compass. The doctors looked at each other, recognizing the symptom. “Cerebellar ataxia,” Parvizi mouthed to another doctor. Cerebellar ataxia, a hallmark sign of multiple sclerosis, is the loss of muscle coordination. The cerebellum, a fist-sized 150-gram chunk of tissue, sits between the bottom of the brain and the top of the spinal cord. This structure accounts for 10 percent of the total volume of the brain, yet it contains half of all neurons. It coordinates the expression of involuntary, moment-to-moment muscle movements, fine-tuning motions we don’t need to think about to perform. When compromised by brain damage, the cerebellum, or “miniature brain” in Latin, can’t relay proper instructions to the brainstem, which executes many prepackaged muscle movements, including the diaphragm and facial contractions of laughing and crying.

Back in 2001 Parvizi was a graduate student at University of Iowa College of Medicine. He and his colleagues were studying a middle-aged landscaper who had suffered a stroke the year before and had been left with unexplained episodes of laughing and crying. A CAT scan presented damaged tissue in his cerebellum and brain stem, not surprising for a stroke victim. But the finding that the cerebellum could be a leading antagonist in the wrenching drama of PLC was something new—and perhaps game-changing—for emotional science.

The old explanation for PLC dates back to 1924, when neurologists worked with limited anatomical data. Basically, it was assumed that the healthy frontal lobe within the cerebral cortex usually regulates the emotional structures buried deeper in the brain. In that view, when those “higher” brain areas that endow us with rational, voluntary behavioral control fail, wild, pathological emotions are unleashed. But the voluntary pathway theory cannot explain why PLC patients often have no problem performing voluntary facial muscle movements. They can even mimic laughing and crying. Parvizi and his team knew that there had to be something going wrong with involuntary, automatic behavior patterns.

The seeming neurological magic through which an emotionally loaded stimulus turns into a physical expression is no simple process. But unlike the turn-of-the-century scientists, neuroscientists now know that it involves constant communication between networks. In neuroscience terms, major players are “induction sites” and “effector sites.” Induction sites, such as the amygdala or ventral striatum, pair a stimulus with an emotion. “You can think of an induction site like a switchboard deciding that when a snake comes, the best output is a sense of fear,” explains Parvizi. Effector sites, such as regions of the brainstem, execute the actual physical expression of that emotion, the part when we actually feel fear or joy. They are the warehouses producing the actual act of laughing or crying: moving the facial muscles up, spreading your lips, producing tears.

Induction and effector sites do not operate in a linear step-by-step fashion in a healthy brain. Instead, Parvizi’s research suggests, the cerebellum could be intercepting the induction signals before they reach the effector site, like a checkpoint. The “mini-brain” then makes sure our behavior plays appropriately in the social context, deploying a lifetime of cultural learning. It’s an idea that adds an entire new continent to the map of emotion: Rather than the brain’s frontal lobe serving as the geographic hotspot of rational decision making, instructions from the frontal lobe, along with autobiographical memories and tactile and visual data sent from other brain areas, wind up at the cerebellum. The cerebellum then adjusts the emotional response to match the social setting. Finally, the brainstem executes the response. Making sure that what would have been a shriek of laughter in the café is a soft giggle in a classroom is the cerebellum’s constant chore. But when this disciplinarian is ailing, as in some cases of PLC, behaviors can swing wild.

Parvizi’s PLC research has led him to believe that emotions, instead of being consciously controlled, are spontaneous reactions that rely on an intact involuntary brain system to be appropriately projected into the world. This distinction has major implications for our belief in self-control. Through cognitive neuroscience’s history, it’s been assumed that the brain’s evolutionarily newer frontal lobe regulates the more primitive regions of emotion, desire, and instinct, “as if there are beasts living in the basement, and the tower controls those beasts,” Parvizi says. He calls this an outdated Victorian-era bias that insists our free will should be able to conquer instinct. In fact, the brain’s structures are more interdependent. And those beasts of emotion are much, much more complex.

He says that we certainly can consciously control our expressions, even during those perilous mouthfuls of milk. We have both voluntary and involuntary systems, but it seems like the brain uses autopilot settings much more than conscious direction. “It’s an old notion that we regulate our behavior through a very conscious process, through a hierarchical top down process,” he says. “My idea is that we respond automatically in a context and that automatism is built partly from our culture.” In other words, early childhood socialization and lifetime experiences, coded into memories, factor into our automatic emotional responses. For example, in Japan, where emotional suppression is valued, people tend to avoid overt emotional displays. Parvizi acknowledges that this is an area wide open for debate. It is not yet clear, for instance, if those cultural pre-sets are stored in the cerebellum, or sent there from other brain areas.

The evaluation in the Stanford Neurology Clinic ended. Diagnosis: Pathological Laughing and Crying induced by Multiple Sclerosis. Nicole was wheeled out with a prescription for an antidepressant medication that will raise her brain’s emotional threshold and hopefully dampen her haphazard emotional outbursts. If the treatment works, it will take more than a passing sad memory to trigger her tears. The space where the Nicole sat was suddenly quiet. “And this is something we see over and over—,” Parvizi said, turning to me. “The problem isn’t a lack of voluntarism. It’s something much more.”

Acted Emotions

And then there are individuals who, unlike those patients with PLC, are so in control of emotional expression that they can willingly propel their bodies into the involuntary displays of laughing and crying. Intimate understanding of their own emotional physiology allows them to trigger or squelch emotional phenomena. As Hamlet puzzled, “Is it not monstrous that this player here, but in a fiction, in a dream of passion, could force his soul so to his own conceit, that from her working all his visage waned, tears in his eyes, distraction in his aspect, a broken voice, and his whole function suiting with forms to his own conceit?” The expression of genuine emotion without any personal reason to feel it is the prerogative of the performer, or the “player” in Shakespeare’s day. The talented performer spends hours refining and practicing the ability to laugh and cry in a matter of seconds in front of a sea of onlookers. For the actress, mastering the emotional is artistry; for the neuroscientist it is elusive science.

Josef Parvizi’s former professor back in Iowa was Antonio Damasio, who is now a neuroscientist at the University of Southern California. He has long been determined to understand how circumstances trigger emotions and how emotions then become feelings, as they do in actors and everyone else. He developed today’s leading theory of emotion, the somatic marker hypothesis, which builds on those of the giants before him, such as Carl Lange and William James, the scholars who first noted that feelings arose from perceptions of our body state. Of course, as Damasio’s more nuanced research methods have revealed, it is a bit more complicated than that.

To distinguish between human emotion and feeling, Damasio starts at the beginning. He sees emotion as a package of survival tools that originally evolved to help living beings navigate their environment safely, providing bodily warnings of dangerous situations. These responses later evolved to cause positive and negative feelings, which extended the impact of emotions by leaving a permanent stamp on memory. Over millions of years, this feedback process between organism and environment birthed foresight, and eventually, the human ability to respond to situations creatively.

Emotions familiar to us, such as happiness or anger, require an initial stimulus, a sight, smell, or memory. Physical changes follow. Feelings unfurl. Stimuli can even be simple actions. Back in 1992, Psychologist Paul Ekman found that voluntary smiles and grimaces produce changes in the autonomic nervous system. His study participants actually began to feel happy or sad or angry after following instructions to set their facial muscles in certain positions. “Psychologically unmotivated and ‘acted’ emotional expressions have the power to cause feeling,” Damasio writes. Enter the actress.

Once More, with Feeling

Credit:  Jacques Gabay Donio

Credit: Jacques Gabay Donio



Sheila Donio first attempted to cry onstage as the character “Rizzo” in a stage production of Grease in 2001. She has acted since childhood and settled into professional acting career as a teenager in São Paulo, Brazil. “As I knew I wanted to cry on a specific scene,” she explained, “I started to work on Rizzo’s emotions at home, listening to the song used right before my crying scene. Studying Rizzo’s emotions with that specific soundtrack made my brain connect one thing with the other.” Method acting, techniques devised in the 1930s by Constantin Stanislavski, and later adapted by director Lee Strasberg, emphasize this use of sense memory. Students of this method learn to use personal memories of sensory details to trigger authentic physiological reactions.

Teaching herself, Sheila used this process to tap into the pathways of her brain responsible for the generation of crying. Crying on command became second nature. “Every time I heard that song, I would start to feel her anxieties and frustrations and the buttons for crying would show up in my body, ready to be pressed.” In fact, Sheila’s method of manipulating her body’s physiology is a living demonstration of Damasio’s theory of emotion.

In 2000, Damasio and his colleagues published the results of a landmark study in the field of emotion and feeling. The team asked 41 individuals to recall a particularly vivid emotional episode of their lives, memories charged with happiness, sadness, anger, or fear. (In a prior screening session, only the participants proven to experience emotional changes when recalling previous events were chosen.) Hooked up to a PET scanner, which detects specific activity in brain regions, the participants re-lived the chosen experience. As instructed, they each made a hand movement when they began to feel the anger, happiness, or sadness.

Electrodes measuring the volunteers’ physiological phenomena —things like heart rate and sweat levels in skin—registered drastic changes before the hands were raised. In other words, Damasio’s team found that people reported feeling emotional only after the eruption of a physical emotion. “It’s very important for you to think of emotion as an action, so crying is a component of emotion, never as a part of feeling. Feeling is a perception of the action we have,” he told me. Of course, only tears give Sheila confirmation that conjuring the emotionally tinted memory of Rizzo’s song, or “pushing her buttons for crying,” can trigger an authentic emotional cascade.

In that same study, Damasio found that the body-sensing region of the brain, the somatosensory cortex, came online as the feelings arose. Later, in 2006, he reported that for each basic emotion (e.g., happiness, sadness, anger, and fear) there is a distinct cardio-respiratory pattern. Linking these data sets together, in a technology-age tweaking of the James-Lange theory, Damasio suggests that feelings arise from “maps” continually forming in brain regions such as the somatosensory cortex. The brain doesn’t have simple “on” and “off “emotional switches. It is always in flux. Feelings are more than the brain’s perception of emotion; they are a constant process of mapping shifting body states.

Sheila makes daily use of those “maps.” “I study how my body reacts when I am crying for real, in real life. It’s all about breathing, for me. I get myself on the highway that leads me to cry. When I do improv theatre, this is how I find my emotions in 30 seconds,” she said. As Sheila adjusts her inhalations and exhalations, her somatosensory cortex detects the body map for crying. Genuine sadness follows the tears. The tears amplify the feelings, triggering sharper emotion, creating a positive feedback loop. What Sheila describes as a “highway,” Damasio thinks of more as a two-way traffic rotary.

‘E’-motion

Emotion in acting is not all about conjuring tears through physiological manipulations and memory recall. The audience in the back row needs to recognize the crying or joyous body just as intensely the people in the front row. That’s why the performer must play to the visual brain, or the mirrors reflecting within it.

Our brains can “mirror” the actions of those we watch. We feel our muscles clench when we watch a figure skater twist in the air, or when we crack a smile as a stage performer grins. That’s the work of the proposed “human mirror neuron network,” part of our visual brain. Basically, swaths of neurons in the human premotor cortex activate both when we are performing an action and watching someone else perform that action. The young science of our mirroring ability is rapidly gaining a spot in emotional neurobiology. After all, “motion” and “emotion” live just one letter apart.

In 1995, Vittorio Gallese of Parma University in Italy discovered mirror neurons in macaque monkeys. His continued explorations of mirroring behavior have most recently focused on the contagious nature of action and sound. He had a professional actor and actress perform sorrow and joy without uttering words—laughing and crying. He showed other participants silent versions of the actors’ embodiments and recorded the movement of their facial muscles. In a second condition, the participants heard only the sound of laughing or crying. “The results are pretty interesting,” he reported at a mirror neuron conference in 2007. “If you see someone laughing, you have strong activation of your zygomatic muscle, which is active when you laugh. If you see someone crying, you have an activation of the corrugator supercili. The same results are obtained with sound.” So, whether we hear laughing or crying, or watch the actions in silence, our smiling and frowning muscles automatically begin to respond. In essence, our emotions are contagious.

Sophie Scott, neuroscientist at University College of London, pressed ‘play’ on her iTunes and a cacophony of laughter and shrieks (as well as gagging and groans) attacked the air, causing both our faces to cringe and smile. In 2006, these were the sound samples used in a study into emotional mirroring. Twenty subjects listened to the samples, both positive and negative emotional vocalizations, while their brains were scanned with fMRI. They were told not to move their faces.

She was looking into the brain’s premotor cortex, a slice of which houses the neurons that control those facial expression muscles of smiling or laughing, the ones actors use so much. Her research team analyzed the participants’ brain activation while they heard the amused sounds. The disgust sounds were used as controls this time. Even though they were not actually smiling or laughing, the predicted slice of premotor cortex became active when the subjects heard the delight noises. These participants were experiencing other people’s apparent happiness through sound alone. In essence, their brains were starting to share a laugh.

This brings us back to Shakespeare’s cogent demand: ‘Tell me where fancy is bred/ Or in the heart, or in the head?’ Always immersed in theatre, he knew implicitly that authentic exuberance involved no forced smiles, but instead pink cheeks, watery eyes, and quickened breath. The evidence stood in front of him. Hundreds of years later, the technology of neuroscience provides a more complicated answer. Bodily emotion and moody feelings, head and heart, are constantly intertwined, reciprocal, looping processes. They do not exist separately. Once made visible, emotion’s expression requires some exacting architecture. This neurological machinery operates without permission, exposing our feelings to others. Still, to see how far fancy can travel outside the body, we’ve never needed fMRI scans. Just smile as you pass someone on the sidewalk and watch for the smile back.

Sparks Fly as Art and Science Collide in “Ocean Stories”: A Review

Posted on April 5, 2013

In the space of fifteen minutes, three different parents have had to pull their curious children back from an oil painting at Boston’s Museum of Science. It’s too late for that. A little girl in a pink jacket rushes up and runs her hand across a swirl of peach paint, as her mother cries, “Don’t touch!” I, too, wouldn’t mind getting closer to artist Bryan McFarlane’s colorful rendering of deep-sea hydrothermal vents. These chimneys in the ocean floor erupt with boiling, mineral-rich fluids, providing bizarre organisms with energy where sunlight doesn’t reach.

As published in Oceans at MIT | Apr 5, 2013

Like all the art works displayed in the “Oceans Stories” exhibit, McFarlane’s painting reinterprets the research of ocean scientists from MIT or Woods Hole Oceanographic Institution. The inky darkness alive with bright orbs and strange aquatic shapes envisions the underworld that chemical oceanographer Jill McDermott scours by the dim light of a submarine, part of how she studies the chemical reactions sustaining benthos in extreme temperatures and pressure. In his painting, as in her research, treasures hide in plain view.

“Ocean Stories” is a production of Synergy, a newly formed experimental organization aiming to stimulate a “collision of art and science.” Executive director Whitney Bernstein, an oceanographer working towards her PhD from the WHOI/MIT Joint Program, says the idea for the project stemmed from a desire to communicate scientific issues to a wider audience. “I’m struck by the ability of art to convey expansive ideas in a concise way,” she says. “It gets to the heart of the story and can tell it in a visceral way.” She wasted no time turning the “spark in her brain” into Synergy’s first project.

In 2012, Bernstein, along with co-director Lizzie Kripke and program coordinator Michael MacCohen, paired professional artists with eight ocean scientists from MIT and WHOI, birthing this collection of sculpture, painting, and digital media. The diversity of the finished products was unplanned and unprompted.
If you walk clockwise around the exhibit room, the first work you’ll see is a photo collage of healthy, vibrant coral reef ecosystems and barren, bleached lifeless coral skeleton, the result of a collaboration between artist Joseph Ingoldsby and oceanographers Katie Shamberger, Hannah Barkley and Alice Alpert. It’s an unambiguous introduction to the uncomfortable reality that human activity damages ocean life in very tangible ways. Scientists have the job of closing the big gap between knowing there’s a crisis and understanding exactly how the ocean is changing, chemically, thermally, physically. At least for me, the images peak a curiosity about the research explored through the rest of the exhibit.

More ocean-floor science was to be visited: Laurie Kaplowitz’s mixed-media drawings are inspired by biological oceanographer Ellie Bors, who uses the DNA of deep-sea animals in order to understand how different species are evolutionarily related to one another. One very tall monochromatic drawing uses actual words lifted from Bors’ daily lab notebook. These inscriptions are written over and over each other, forming a chalk-dusty cloud billowing upwards against the pitch black. While I strain my eyes trying to make out individual phrases, I realize that Kaplowitz has exactly mirrored the experience of a scientist questing to decipher the mysterious biological and genetic messages floating in these deep-sea vents.

In the center of the room stands one of the most cognitively demanding works of art: Nathalie Miebach’s enormous wood and rope sculpture of carnival rides–a Ferris Wheel, roller coaster, and merry-go-round that incorporate the unusual art medium of actual data. Meibach collaborated with Jonathan Fincke, an ocean engineer who wants to understand how climate change affects ocean productivity. He uses acoustic techniques to measure sound that echoes off the tiny bodies of zooplankton, which allows him to track the distribution and behavior of a critical member of the food web.

Little pink origami shrimp are stuck into the Ferris wheel’s spokes. I don’t understand why until I read that Meibach literally used Fincke’s acoustic data to illustrate the presence of krill, a type of zooplankton, in the water near Georges Bank, Maine, over time. For example, the merry-go-round depicts how krill data vary with air and water temperature, salinity, current, wave height, and sun’s angle. The longer you look back and forth from the sculpture to the written explanation accompanying “To Hear the Ocean in a Whisper, the more patterns you see.

Some people take time to read the text. Some peer into the twisting structure and wander away. Everyone says, “Wow!” as they look.

My personal favorite grapples with the issue motivating oceanographer Sophie Chu. It’s a simple concentric arrangement of 350 eggshells. The shells’ surfaces, however, warp and melt, having been deformed by acid. The connection to science is direct. The ocean absorbs up to a third of the carbon dioxide released by human activity. As a result, the ocean is becoming more acidic, inhibiting the ability of corals and other organisms to make their shells. The eggshells in artist Karen Ristuben’s work stand in for pteropods, or sea snails, who are especially vulnerable to ocean acidification. It’s disturbing, striking, and concise. Ugly damage to the delicate geometry of Nature. “It gets to the heart of ocean acidification,” says Bernstein. “It hurts shells–but pteropods are tiny, so why should we care? Well, they are numerous, and they are a critical food for fish.”

There are plenty more art works at the exhibit than I can mention here, including a poem-lithograph fusion that provides a better, more accessible explanation of the ocean’s carbon cycle that I have ever read, ever; the spectacular physics of ocean eddies embodied in intricately hand-dyed fishing line; and slow-motion computer-generated abstractions representing the endangered relationship between coastal eelgrass habitats and sunlight.

Bernstein and her team have yet to evaluate whether the public is actually engaging with science, whether they leave the room driven to learn more about marine issues. But I can see some positive signs. On her way out of the exhibit, Boston resident Tegan Mortimer reports, “It’s a fascinating way to view the ocean—through the eye of an artist,” she says. “It’s more than looking at a photo. The art provides emotion and gives a new way of seeing the current problems.” It’s true. For all the practical differences, science and art are natural partners. Ocean research brings us to faraway places, sometimes all the way down to the seafloor; Art reaches the short distance inside us by the instantaneity of emotion reaction. Artistic expression of the scientific process, therefore, collapses the long miles that can lie between ocean discovery and the public’s attention. And that’s, well, true synergy.

“Ocean Stories” is on display until June 2.

More to Melting Glaciers than Meets the Eye

Posted on March 24, 2013

From afar, glaciers and ice sheets appear to be solid blocks of ice, but inside they actually contain a complex system of crevasses, cracks and conduits. When a glacier melts, the runoff travels to the bedrock and sediment below through large tunnels and drains into the ocean via rivers. Conventional wisdom once held that glacial meltwater was simply a source of biogeochemically dilute freshwater to the ocean.

As published in Oceans at MIT | Mar 24, 2013



In the 1990s, a team of Canadian researchers discovered bacteria thriving on the wet undersides of Swiss and Arctic glaciers. Back in the lab, they noted that some of the bacteria produced their energy by oxidizing sulfide, a process that yields iron as a byproduct. “It’s fair to say we didn’t pay a lot of attention to that at the time,” says Martin Sharp, Professor and Chair of Earth and Atmospheric Sciences at the University of Alberta. But it wasn’t long before others connected the dots; glacial meltwater could be picking up iron from the subglacial ecosystem and transporting it into the ocean. Since then, a still growing line of inquiry has opened into whether glacial iron can significantly impact marine systems.

Phytoplankton require iron to survive and thus to produce half the oxygen in the atmosphere, form the base of the food web, and suck up carbon dioxide gas. The amount of bioavailable iron limits how much they can do so. In the Southern Ocean, biochemist Rob Raiswell has shown that the dirty bottoms of icebergs transport floating oases of iron far offshore to stimulate phytoplankton productivity in the close vicinities. The North Atlantic is thought to receive most of its iron from airborne dust. Not so fast. Glacial meltwater may be adding just as much, according to a Greenland-traversing team of Woods Hole Oceanographic Institution researchers who published in March’s advance online edition of Nature Geoscience.

During the course of two expeditions to the Greenland ice sheet in May and July 2008, WHOI glaciologists and biochemists collected meltwater samples from sites at three land-terminating glaciers. The team ultimately calculated that the Greenland ice sheet runoff contained iron at micromolar concentrations–several orders of magnitude higher than the nanomolar amount recorded in the one existing prior study.
“Most people think melting glaciers and ice sheets are important in terms of predicting sea level rise,” said the study’s lead author, Maya Bhatia, then an MIT/WHOI Joint Program graduate student and now a post-doc at the University of British Columbia. “But it’s interesting to think there could be other ramifications from the chemical input coming from these runoff rivers that have a very different chemical characteristic from regular rivers.”

Plausibly, glacial meltwater could add enough iron to intensify phytoplankton blooms and boost their atmospheric carbon dioxide uptake, especially considering that the Greenland ice sheet’s freshwater flux to the ocean spiked from 1992 to 2010. There’s reason for this hypothesis. Previous research shows that airborne dust doesn’t contribute sufficient iron to support maximum primary productivity in the North Atlantic in spring and summer. Moreover, oceanographers recently documented a strong correlation between the intensity of the spring plankton blooms in the North Atlantic Ocean and the amount of water draining off the Greenland ice sheet. Could iron in glacial meltwater be the missing link?

While it’s certain that iron is coming from under the glaciers, no one has confirmed that the nutrient is reaching iron-limited ocean regions or if it’s even bioavailable to organisms. “We don’t really know if the iron will spur additional algal blooms that will take in more atmospheric carbon dioxide. That’s the first step, and until we know that, we won’t know the ultimate effect,” says Bhatia, who also notes that the better-studied glacial contribution of dissolved organic carbon provides additional feedback loops to consider.

Martin Sharp, whose 1999 study spearheaded this biogeochemical line of glacier work, underscores that this research is still stuck at square one. He notes that the WHOI group’s measurements might be biased on the high side, as they were taken at the beginning and near the end of the melt season, a time when glacial runoff contains relatively high concentrations of solute, and then extrapolated to the whole ice sheet. “We need to get a firmer number for the total flux from the whole ice sheet,” he says. “Nonetheless, on the basis of the data available, the message is still clear it could be significant and it’s worth looking at further, for sure.”

The emerging view of glacier and iceberg ecosystems as significant sources of iron could lead to major revisions in paleoclimatology. The Earth has gone through times when half its surface was covered in ice. What was the effect of the subglacial iron cycled by ice-dwelling microbes when all that ice melted into the ocean? And how much did changing patterns of release and storage shape the Earth’s atmosphere into what it is today? It’s up to climate scientists to complete that puzzle, but not before a mix of biogeochemists, oceanographers, and microbiologists begin to understand that which flows from microbes beneath glaciers into microbes under the sea.

Demystifying the Cretaceous Hothouse

Posted on March 19, 2013

Fifty-five million years ago, the Earth was ice-less. Winters were balmy. Palm trees flourished all the way to the poles. As evidenced by fossils, crocodiles and broad-leaved, water-loving plants existed north of the Arctic Circle. This warmer world had warmer oceans, featuring deep ocean temperatures of 12 °C higher than now. For any climate scientist who enjoys stretching the limits of current theory by imagining ancient worlds, the ever warm polar regions of the mid-Cretaceous have long presented a paradox.

As published in Oceans at MIT and MIT News| March 19, 2013

sanc0313Unlike the present-day climate, only a small difference (gradient) in temperature existed between the equator and the poles of the ice-less Earth. Theoretically, that weak temperature gradient results from the increasing efficiency of the atmosphere at transporting heat from the equator up to the poles in a warmer climate. However—and here’s where climate scientists get annoyed—the atmospheric turbulence required for that increased heat transport itself demands a high, not low, temperature gradient. “That’s the confusing part. To explain the weak gradient you need a strong gradient,” says David Ferreira, research scientist in the Department of Earth, Atmospheric, and Planetary Sciences at MIT, whose potential solution to this paradox appears in the March issue of Journal of Climate (in press).

Ferreira and colleague Brian Rose (MIT PhD ’10), a visiting scholar in the Department of Atmospheric Sciences at the University of Washington, decided to find their way out of the paradox. “One way around it,” said Ferreira, “could be if the ocean warms the poles efficiently without transporting heat directly to them.” So, they created a model ice-free aquaplanet to look for a mechanism by which the ocean would transport heat from the tropics into the poles indirectly.

They found that the mechanism involves water vapor. In their model ocean, the ocean transports heat poleward, but not all the way. Instead, the ocean releases the heat into the atmosphere at mid-latitudes. There, the warming sea surface leads to more evaporation and thus more water vapor. As Rose and Ferreira increased the amount of water vapor in the lower atmosphere, they observed increased injection of warm moist air into the upper troposphere. The water vapor, which is a potent greenhouse gas, caused an enhanced greenhouse effect of warming that extended all the way to the poles. Essentially, the water vapor acts like an atmospheric bridge, picking up the process of heat transport where the ocean’s job ends.

The word to describe this research is “creative,” according to Dorian Abbot, Assistant Professor of Geophysical Sciences at the University of Chicago, who also models exotic climates: “This paper is an excellent example of the harvest one can reap by approaching climate research from a “scientia gratia scientae” perspective, allowing oneself to play with abstractions and follow them where they may lead rather than being tied too closely to explaining the details of specific phenomena.”

As Rose and Ferreira’s work explored a warm ocean on a planet comfortably hosting palm trees at high latitudes, their model can’t offer insight into the present-day or future ocean. But, as Abbot implies, this work isn’t only about explaining the causes of real-world phenomena. It’s aimed at deepening a general understanding of fundamental ocean-atmospheric mechanisms that will be used over and over again in many areas of future academic study. Certainly, few climate scientists will look at past warm climates with the same frustration again.

Inside Quicksilver’s Toxic Transformation

Posted on March 10, 2013

The element mercury, dubbed “quicksilver” by Aristotle, has allowed us to measure temperature and atmospheric pressure, mine precious metals, repair dental cavities, and create energy efficient light bulbs. But coal burning, gold mining, and industrial processes emit thousands of tons into the atmosphere per year, and it all eventually ends up in the ocean. That’s where the trouble starts. Mysterious biological processes tack on a single CH3 methyl group to the metal atom, yielding methylmercury (MeHg), a proven developmental neurotoxin that accumulates in the seafood we eat.

As published in Oceans at MIT | Mar 10, 2013

Mercury has extraordinary staying power, cycling in the atmosphere-ocean-land system for up to 3,000 years before returning to the deep ocean sediments. “Once it’s emitted into the atmosphere, it’s like letting a bad genie out of the bottle because you can’t get it back in,” says Michael Bothner, Geochemical Oceanographer Emeritus at USGS Woods Hole Coastal & Marine Science Center.

Global distribution of anthropogenic mercury emissions to air in 2010. Courtesy UNEP



At constant mercury emissions levels, seawater mercury concentrations in the North Pacific Ocean, a major fishing region, is estimated to double by 2050 relative to 1995 levels, as shown by recent Harvard research. While this scenario grows alarming in the light of the fact that mercury emissions from Asia will increase in the near future, there is huge uncertainty about how much of that mercury will actually convert to its alter ego and get to the seafood counter.

Carl Lamborg, a biogeochemist at Woods Hole Oceanographic Institution, has shown that methylmercury production is not a general feature of the entire ocean but actually occurs in very specific regions. He has established that a low-oxygen layer of water in different parts of the ocean between 100 and 400 meters thick and 100 to 1,000 meters below the sea surface contains high levels of MeHg. Since then, he has grown confident that the MeHg comes from marine bacteria living in that mid-water layer, but they belong to a species he’s yet to track down.

In lakes and sediments, sulfate-reducing bacteria produce MeHg–but not in the ocean. In fact, those bacteria have trouble living in the presence of oxygen, ruling them out as culprits. “It’s frustrating and exciting at the same time learning that what we know about methylmercury in coastal sediments probably doesn’t apply to the ocean,” Lamborg says. “We’ve had to look for whole new explanations.” He and MIT/WHOI Joint Program graduate student Kathleen Munson have found that trace metals may be the answer.

Trace metals naturally present in the ocean, such as zinc, copper, or iron, act as essential micronutrients for marine biota. For example, phytoplankton need iron to survive; the availability of iron in the ocean “limits” the amount of phytoplankton that can grow. Lamborg and Munson recently found evidence that a different trace metal is required by the MeHg producers. “We think that in certain parts of the ocean, the amount of methylmercury being produced is limited by cobalt,” says Lamborg. In other words, it may be that cobalt acts like a fertilizer, enhancing the ability of certain marine bacteria to transform mercury into methylmercury.

Their preliminary finding recently gained new direction from a breakthrough at the Oak Ridge National Laboratory in Tennessee, published last month in Science. There, researchers isolated two genes required for mercury methylation in sulfate-reducing bacteria. Surprisingly, one of those genes encodes a protein that requires a cobalt atom to methylate mercury, which together with Lamborg and Munson’s work, points to the exciting possibility that the ocean’s mystery methylators use that exact cobalt-requiring gene or similar ones. Now, they know what to hunt for. Munson has already collected ocean samples and is just starting to comb through the bits of DNA to determine if those freshly identified genes are more abundant in ocean regions showing methylation.

This work is still far too young to, for example, guide local fishing practices or prevent mercury methylation in the ocean, but understanding mercury methylation is valuable, Lamborg notes, “for learning how this system might respond to changes in total amount of mercury being added to the ocean. If we decide we want to continue burning coal, it would be a good to know how that continued perturbation will manifest itself and if we will see increases in methylmercury in fish or not.”

The United Nations Environment Programme, which agreed in January on a long-awaited global environmental treaty focused on reducing mercury pollution, stated in its own report, the Global Mercury Assessment for 2013: “Under the best-case scenario of maximum feasible reductions, projected estimates for [mercury] deposition in 2050 is similar to estimates for today.” And thus, it’s safe to say the day will never come when tuna and swordfish are safe for everyone. But this MIT/WHOI research hints that somewhere in a complex chain of interactions between mercury, trace metals, and particular genetic profiles of certain marine bacteria, there could be something we can control.

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